| Current release ► | MethMotif version 2.0 |
Program updates:
Updated TF cards were added to: 1) MethMotif's Explore heatmaps; 2) MethMotif's Batch Query. |
13 May 2022 |
| MethMotif version 2.0 |
Program updates:
TF cards were updated with a TF cofactor list that includes: 1) TF logos and binding site methylation profiles in the context of each TF partners; 2) Genomic locations of the TF of interest in the context of each TF partners; 3) Gene ontology analyses of TF's targets in the context of each TF partners. |
29 April 2022 | |
| MethMotif version 2.0 |
Program updates:
Modified the framework of methmotif.org to increase portability and interoperability |
8 December 2021 | |
| MethMotif version 2.0 |
Program updates:
Local mirror setup on Memorial Univserities compute cluster Centre for Health Informatics and Analytics (CHIA) for: 1) Testing future updates; 2) Decreasing TFregulomeR's execution time. |
29 October 2021 | |
| MethMotif version 2.0 |
Bug fixed:
Fixed the glitch in the Batch Query's CAPTCHA and query function on methmotif.org/find_motif_tool/. |
9 July 2021 | |
| MethMotif version 2.0 |
Program updates:
1) MethMotif plant database was added; |
30 November 2020 | |
| MethMotif version 2.0 |
Data updates:
1) MethMotif plant database was added; 2) 23 new factors in plant species Arabidopsis thaliana were added. |
24 June 2020 | |
| MethMotif version 1.3 |
Program updates:
MethMotif has been additionally hosted in Compute Canada server via https://methmotif.org. |
5 March 2020 | |
| MethMotif version 1.3 |
Program updates:
MethMotif API - TFregulomeR has been launched. |
5 November 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 18 new DNA binding proteins in GM12878 cell line were added (details). 2) 2 new DNA binding proteins in H1-hESC cell line were added (details). 3) 3 new DNA binding proteins in HCT116 cell line were added (details). 4) 4 new DNA binding proteins in HEK293T cell line were added (details). 5) 9 new DNA binding proteins in HeLa-S3 cell line were added (details). 6) 89 new DNA binding proteins in HepG2 cell line were added (details). 7) 39 new DNA binding proteins in K562 cell line were added (details). 8) 25 new DNA binding proteins in MCF-7 cell line were added (details). |
15 March 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 16 new DNA binding proteins in LNCaP, a prostate adenocarcinoma cell line, were added (details). |
6 March 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 13 new DNA binding proteins in HEK293 cell line were added (details). 2) 9 new DNA binding proteins in H9 cell line were added (details). 3) 18 new DNA binding proteins in HUES64 cell line were added (details). |
2 January 2019 | |
| MethMotif version 1.3 |
Data updates:
17 new DNA binding proteins in HEK293T cell line were added (details). |
28 November 2018 | |
| MethMotif version 1.3 |
Bug fixed:
Malfunction of search engine autocompletion in https has been fixed. |
17 November 2018 | |
| MethMotif version 1.3 |
Data updates:
2 new factors were added in human SNU398 cell line (details). |
6 November 2018 | |
| MethMotif version 1.3 |
Data updates:
1) MethMotif mouse database was added; 2) 39 new factors in mouse MEL cell line were added (details). |
4 November 2018 | |
| MethMotif version 1.2 |
Program updates: CAPTCHA was added in MethMotif Batch Query to avoid overloading by robots. |
22 October 2018 | |
| MethMotif version 1.2 |
Program updates: 1) A link to MethMotif card was added in MethMotif Batch Query outputs; 2) Three states of MethMotif logo based on DNA methylation levels were added; 3) A more explicit MethMotif logo legend was added; 4) Motif distrubition was added for each TFBS. |
1 October 2018 | |
| MethMotif version 1.1 |
Data updates: 1) 11 new factors were added for GM12878; 2) 22 new factors were added for MCF-7; 3) 1 new factors were added for H1-hESC; 4) 2 new factors were added for HCT116; 5) No new release for HeLa-S3 in ENCODE. |
19 April 2018 | |
| MethMotif version 1.1 |
Data updates: 32 new factors were added for HepG2. |
13 April 2018 | |
| MethMotif version 1.1 |
Data updates: 65 new factors were added for K562. |
9 April 2018 | |
| MethMotif version 1.1 |
Data updates: Data for IMR-90, SK-N-SH and A549 were added. |
3 April 2018 | |
| MethMotif version 1.1 |
Data updates: Data for K562, GM12878, HepG2, H1-hESC, MCF-7, HCT116, HeLa-S3 and HEK293 were added. |
26 March 2018 |
| Cell ID | Species | Origin | Number of ChIP-seq experiments | Source | Download date |
|---|---|---|---|---|---|
| MEL | Mouse | Spleen | 78 | ENCODE | 21 Sep 2018 |
| Cell ID | Species | Origin | Replicate number | Source | Release date |
|---|---|---|---|---|---|
| MEL | Mouse | Spleen | 1 | Benoukraf Lab | 21 Sep 2018 |
human
mouse
plant