| Current release ► | MethMotif version 1.3 |
Program updates:
MethMotif has been additionally hosted in Compute Canada server via https://methmotif.org. |
5 March 2020 |
| MethMotif version 1.3 |
Program updates:
MethMotif API - TFregulomeR has been launched. |
5 November 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 18 new DNA binding proteins in GM12878 cell line were added (details). 2) 2 new DNA binding proteins in H1-hESC cell line were added (details). 3) 3 new DNA binding proteins in HCT116 cell line were added (details). 4) 4 new DNA binding proteins in HEK293T cell line were added (details). 5) 9 new DNA binding proteins in HeLa-S3 cell line were added (details). 6) 89 new DNA binding proteins in HepG2 cell line were added (details). 7) 39 new DNA binding proteins in K562 cell line were added (details). 8) 25 new DNA binding proteins in MCF-7 cell line were added (details). |
15 March 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 16 new DNA binding proteins in LNCaP, a prostate adenocarcinoma cell line, were added (details). |
6 March 2019 | |
| MethMotif version 1.3 |
Data updates:
1) 13 new DNA binding proteins in HEK293 cell line were added (details). 2) 9 new DNA binding proteins in H9 cell line were added (details). 3) 18 new DNA binding proteins in HUES64 cell line were added (details). |
2 January 2019 | |
| MethMotif version 1.3 |
Data updates:
17 new DNA binding proteins in HEK293T cell line were added (details). |
28 November 2018 | |
| MethMotif version 1.3 |
Bug fixed:
Malfunction of search engine autocompletion in https has been fixed. |
17 November 2018 | |
| MethMotif version 1.3 |
Data updates:
2 new factors were added in human SNU398 cell line (details). |
6 November 2018 | |
| MethMotif version 1.3 |
Data updates:
1) MethMotif mouse database was added; 2) 39 new factors in mouse MEL cell line were added (details). |
4 November 2018 | |
| MethMotif version 1.2 |
Program updates: CAPTCHA was added in MethMotif Batch Query to avoid overloading by robots. |
22 October 2018 | |
| MethMotif version 1.2 |
Program updates: 1) A link to MethMotif card was added in MethMotif Batch Query outputs; 2) Three states of MethMotif logo based on DNA methylation levels were added; 3) A more explicit MethMotif logo legend was added; 4) Motif distrubition was added for each TFBS. |
1 October 2018 | |
| MethMotif version 1.1 |
Data updates: 1) 11 new factors were added for GM12878; 2) 22 new factors were added for MCF-7; 3) 1 new factors were added for H1-hESC; 4) 2 new factors were added for HCT116; 5) No new release for HeLa-S3 in ENCODE. |
19 April 2018 | |
| MethMotif version 1.1 |
Data updates: 32 new factors were added for HepG2. |
13 April 2018 | |
| MethMotif version 1.1 |
Data updates: 65 new factors were added for K562. |
9 April 2018 | |
| MethMotif version 1.1 |
Data updates: Data for IMR-90, SK-N-SH and A549 were added. |
3 April 2018 | |
| MethMotif version 1.1 |
Data updates: Data for K562, GM12878, HepG2, H1-hESC, MCF-7, HCT116, HeLa-S3 and HEK293 were added. |
26 March 2018 |
| Cell ID | Organism | Cell type/tissue | Number of ChIP-seq experiments | Source | Download date |
|---|---|---|---|---|---|
| IMR-90 | Human | Lung | 15 | ENCODE | 26 Mar 2018 |
| SK-N-SH | Human | Brain | 30 | ENCODE | 26 Mar 2018 |
| A549 | Human | Lung | 42 | ENCODE | 26 Mar 2018 |
| SNU398 | Human | Liver | 2 | GSE112729, GSE103048 | 16 Apr 2018 |
| HEK293 | Human | Kidney | 212 | ENCODE | 10 Dec 2018 |
| H9 | Human | Stem cell | 9 | GTRD | 11 Dec 2018 |
| HUES64 | Human | Stem cell | 13 | GTRD | 11 Dec 2018 |
| LNCaP | Human | Prostate | 16 | GTRD | 11 Dec 2018 |
| GM12878 | Human | Blood | 161 | ENCODE/GTRD | 11 Dec 2018 |
| H1-hESC | Human | Stem cell | 67 | ENCODE/GTRD | 11 Dec 2018 |
| HCT116 | Human | Colorectum | 25 | ENCODE/GTRD | 11 Dec 2018 |
| HEK293T | Human | Kidney | 21 | ENCODE/GTRD | 11 Dec 2018 |
| HeLa-S3 | Human | Cervix | 66 | ENCODE/GTRD | 11 Dec 2017 |
| HepG2 | Human | Liver | 227 | ENCODE/GTRD | 11 Dec 2018 |
| K562 | Human | Blood | 318 | ENCODE/GTRD | 11 Dec 2018 |
| MCF-7 | Human | Breast | 124 | ENCODE/GTRD | 11 Dec 2018 |
| Cell ID | Organism | Cell type/tissue | Replicate number | Source | Release date |
|---|---|---|---|---|---|
| HeLa-S3 | Human | Cervix | 1 | Buck-Koehntop Lab | 30 Jan 2017 |
| IMR-90 | Human | Lung | 1 | ENCODE | 31 Jul 2013 |
| SK-N-SH | Human | Brain | 2 | ENCODE | 13 Dec 2017 |
| A549 | Human | Lung | 2 | ENCODE | 4 Dec 2017 |
| K562 | Human | Blood | 2 | ENCODE | 22 Mar 2016 |
| HepG2 | Human | Liver | 2 | ENCODE | 13 Oct 2015 |
| GM12878 | Human | Blood | 2 | ENCODE | 23 Feb 2016 |
| MCF-7 | Human | Breast | 1 | Stunnenberg Lab | 3 Jul 2014 |
| H1-hESC | Human | Stem cell | 2 | ENCODE | 13 Oct 2015 |
| HCT116 | Human | Colorectum | 1 | Benoukraf Lab | 10 Aug 2018 |
| SNU398 | Human | Liver | 1 | Tenen Lab | To be released |
| HEK293T | Human | Kidney | 1 | Luo Lab | 14 Dec 2016 |
| HEK293 | Human | Kidney | 1 | Bierne Lab | 11 Dec 2015 |
| H9 | Human | Stem cell | 2 | ENCODE | 31 Jul 2013 |
| HUES64 | Human | Stem cell | 2 | ENCODE | 31 Jul 2013 |
| LNCaP | Human | Prostate | 1 | Stirzaker Lab | 17 Mar 2017 |
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